Data Visualisation

Protein Selection

Gene or Protein Name
Taxonomy (Organism or Subtree)
Pfam ID, Name or Description
Publication Title
Author Name
Pubmed PMID

General
- Gene Reconstructions / Protein Count by Organism
- Domain Count by Protein Length
- Species Frequency
Alignments
- PDB Coverage / Sequence Length by Protein
- Alignments by Year
- Alignment Length and Corresponding PDB Chain Length
- Amount of Insertions and Deletions
Secondary Structures
- Secondary Structures by Length
- Consensus Secondary Structures by Length
- Length Ratio of Consensus Secondary Structures
- Secondary Structure Coverage by Protein Length
Gene Structure
- Intron Count by Protein Length
- Amount of Introns in Consensus Secondary Structures
- Position of Introns in Consensus Secondary Structures
- Consensus Secondary Structures with Specific Amount of Introns
- Intron Frames
- Exon Frames
- Amount of Proteins With a Specific Amount of Exons
Codon Usage
- E. coli & S. frugiperda CAI of PDB Chains
- Offset of Rare Codons to Consensus Secondary Structure Borders
- Offset of Rare Codons to Pfam Domain Borders
- Distance of Neighbouring Rare Codons (~ 5 min)
- Amount and Probability of Rare Codons per Secondary Structure Type
- Codon Frequencies per Secondary Structure Type

E-Value Treshold
Maximum Data Points